Software Tools and Environments

Working Group

As science becomes increasingly data-driven, software plays an increasingly important role. However, a gap in the pipeline has emerged: faculty, students, and postdocs in many scientific domains are not equipped to develop and deliver the advanced software they require. Furthermore, even in computer science, conventional academic roles have little incentive to harden, sustain, share, and integrate their techniques into a robust, reusable software infrastructure.

The charge of this working group is to fill this gap. Our goal is to sidestep inefficiencies to software development arising from competitive funding, including overemphasis on novelty, “not-invented-here” syndrome, underemphasis on usability, and a tendency towards overgeneralization or overspecialization.

Together with our counterparts at the University of Washington and New York University, we will conduct a distributed experiment varying people, policies, procedures, and projects to find foundational methods for the development, delivery, and sustainability of science software. Through shared events, mutual testing and outreach, shared software licensing and IP policies, and more, we plan to continually develop high-impact, usable software in domain science; establish ourselves as national leaders in open source software excellence, and attract and retain top data science “builders.”

 

Working Group Members

Leader

Stéfan van der Walt

Berkeley Institute for Data Science
Research Fellow

David Ackerly

Integrative Biology

Carl Boettiger

Environmental Science, Policy, & Management

Sandrine Dudoit

Biostatistics; Statistics

Elena Glassman

Electrical Engineering and Computer Sciences
DATA SCIENCE FELLOW

Christopher Hench

German, Digital Humanities, D-Lab, DSEP
DATA SCIENCE FELLOW

Chris Holdgraf

Data Science Education Program

Jey Kottalam

RISELab
Data Science Fellow

Jarrod Millman

Biostatistics
DATA SCIENCE FELLOW

Dmitriy Morozov

Computational Research Division, Lawrence Berkeley National Lab
DATA SCIENCE FELLOW

Kellie Ottoboni

Statistics

Fernando Perez

Statistics
Co-I for Moore/Sloan Data Science Environments

Saul Perlmutter

Berkeley Institute for Data Science
Director

Karthik Ram

BIDS, Berkeley Initiative in Global Change Biology
Research Scientist

Nathaniel Smith

Computational Fellow

Ion Stoica

AMPLab; Electrical Engineering & Computer Sciences
Co-I for Moore/Sloan Data Science Environments

Daniela Ushizima

Computational Research Division, Lawrence Berkeley National Lab

Nelle Varoquaux

Statistics