Publications

Array Programming with NumPy

Charles R. Harris, K. Jarrod Millman, Stéfan J. van der Walt, Ralf Gommers, Pauli Virtanen, David Cournapeau, Eric Wieser, Julian Taylor, Sebastian Berg, Nathaniel J. Smith, Robert Kern, Matti Picus, Stephan Hoyer, Marten H. van Kerkwijk, Matthew Brett, Allan Haldane, Jaime Fernández del Río, Mark Wiebe, Pearu Peterson, Pierre Gérard-Marchant, Kevin Sheppard, Tyler Reddy, Warren Weckesser, Hameer Abbasi, Christoph Gohlke, Travis E. Oliphant
arXiv.org
June 18, 2020

Exploring high-dimensional biological data with sparse contrastive principal component analysis

Philippe Boileau, Nima S Hejazi, Sandrine Dudoit
Bioinformatics
June 11, 2020

Computing water flow through complex landscapes – Part 2: Finding hierarchies in depressions and morphological segmentations

Richard Barnes, Kerry L. Callaghan, and Andrew D. Wickert
Earth Surface Dynamics
June 2, 2020

Topoclimates, refugia, and biotic responses to climate change

David D. Ackerly, Matthew M. Kling, Matthew L. Clark, Prahlad Papper, Meagan F. Oldfather, Alan L. Flint, Lorraine E. Flint
Frontiers in Ecology and the Environment
June 1, 2020

Curating a COVID-19 data repository and forecasting county-level death counts in the United States

Nick Altieri, Rebecca Barter, James Duncan, Raaz Dwivedi, Karl Kumbier, Xiao Li, Robert Netzorg, Briton Park, Chandan Singh, Yan Shuo Tan, Tiffany Tang, Yu Wang, Bin Yu
arXiv.org
May 16, 2020

Pycro-Manager

Nico Stuurman and Henry Pinkard
May 14, 2020

Computing water flow through complex landscapes, Part 3: Fill-Spill-Merge: Flow routing in depression hierarchies

Richard Barnes, Kerry L. Callaghan, and Andrew D. Wickert
Earth Surface Dynamics
May 5, 2020

Integrative genomic analysis in African American children with asthma finds 3 novel loci associated with lung function

Pagé C. Goddard, Kevin L. Keys, Angel C.Y. Mak, Eunice Yujung Lee, Amy K. Liu, Lesly-Anne Samedy-Bates, Oona Risse-Adams, María G. Contreras, Jennifer R. Elhawary, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Celeste Eng, Blanca E. Himes, Marquitta J. White, Esteban G. Burchard
bioRxiv.org
May 3, 2020

Total COVID-19 Mortality in Italy: Excess Mortality and Age Dependence through Time-Series Analysis

Chirag Modi, Vanessa Böhm, Simone Ferraro, George Stein, Uroš Seljak
medRxiv.org
April 20, 2020

A data science framework for planning the growth of bicycle infrastructures

Luis E. Olmos, Maria Sol Tadeo, Dimitris Vlachogiannis, Fahad Alhasoun, Xavier Espinet Alegre, Catalina Ochoa, Felipe Targa, Marta C. González
Transportation Research Part C: Emerging Technologies
March 28, 2020

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