Publications

Learned adaptive multiphoton illumination microscopy for large-scale immune response imaging

Henry Pinkard, Hratch Baghdassarian, Adriana Mujal, Ed Roberts, Kenneth H. Hu, Daniel Haim Friedman, Ivana Malenica, Taylor Shagam, Adam Fries, Kaitlin Corbin, Matthew F. Krummel & Laura Waller
Nature Communications
March 26, 2021

Principles for data analysis workflows

Sara Stoudt , Váleri N. Vásquez, Ciera C. Martinez
PLOS Computational Biology
March 18, 2021

Accelerating the timeline for climate action in California

Daniel M. Kammen, Teenie Matlock, Manuel Pastor, David Pellow, Veerabhadran Ramanathan, Tom Steyer, Leah Stokes, Feliz Ventura
arXiv.org
March 13, 2021

Pycro-Manager: open-source software for customized and reproducible microscope control

Henry Pinkard, Nico Stuurman, Ivan E. Ivanov, Nicholas M. Anthony, Wei Ouyang, Bin Li, Bin Yang, Mark A. Tsuchida, Bryant Chhun, Grace Zhang, Ryan Mei, Michael Anderson, Douglas P. Shepherd, Ian Hunt-Isaak, Raymond L. Dunn, Wiebke Jahr, Saul Kato, Loïc A. Royer, Jay R. Thiagarajah, Kevin W. Eliceiri, Emma Lundberg, Shalin B. Mehta & Laura Waller
Nature Methods
March 5, 2021

Automated end-to-end deep learning framework for classification and tumor localization from native non-stained pathology images

Akram Bayat, Connor Anderson, Pratik Shah
SPIE Digital Library —  Proceedings Volume 11596, SPIE Medical Imaging 2021: Image Processing
February 15, 2021

A community based approach to universal energy access

Tam Kemabonta, Daniel M.Kammen
The Electricity Journal
February 13, 2021

Examining the Global Spread of COVID-19 Misinformation

Sophie Nightingale, Hany Farid
arXiv.org
January 27, 2021

The LHC Olympics 2020: A Community Challenge for Anomaly Detection in High Energy Physics

Gregor Kasieczka (ed), Benjamin Nachman (ed), David Shih (ed), Oz Amram, Anders Andreassen, Kees Benkendorfer, Blaz Bortolato, Gustaaf Brooijmans, Florencia Canelli, Jack H. Collins, Biwei Dai, Felipe F. De Freitas, Barry M. Dillon, Ioan-Mihail Dinu, Zhongtian Dong, Julien Donini, Javier Duarte, D. A. Faroughy, Julia Gonski, Philip Harris, Alan Kahn, Jernej F. Kamenik, Charanjit K. Khosa, Patrick Komiske, Luc Le Pottier, Pablo Martín-Ramiro, Andrej Matevc, Eric Metodiev, Vinicius Mikuni, Inês Ochoa, Sang Eon Park, Maurizio Pierini, Dylan Rankin, Veronica Sanz, Nilai Sarda, Uroš Seljak, Aleks Smolkovic, George Stein, Cristina Mantilla Suarez, Manuel Szewc, Jesse Thaler, Steven Tsan, Silviu-Marian Udrescu, Louis Vaslin, Jean-Roch Vlimant, Daniel Williams, Mikaeel Yunus
arXiv
January 20, 2021

A reusable pipeline for large-scale fiber segmentation on unidirectional fiber beds using fully convolutional neural networks

Alexandre Fioravante de Siqueira, Daniela Mayumi Ushizima, Stéfan van der Walt
arXiv.org
January 15, 2021

Field performance and public health response using the BinaxNOW TM Rapid SARS-CoV-2 antigen detection assay during community-based testing

Genay Pilarowski, Carina Marquez, Luis Rubio, James Peng, Jackie Martinez, Douglas Black, Gabriel Chamie, Diane Jones, Jon Jacobo, Valerie Tulier-Laiwa, Susana Rojas, Susy Rojas, Chesa Cox, Maya Petersen, Joe DeRisi, Diane V Havlir
Clinical Infectious Diseases
December 26, 2020

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