Publications

Topoclimates, refugia, and biotic responses to climate change

David D. Ackerly, Matthew M. Kling, Matthew L. Clark, Prahlad Papper, Meagan F. Oldfather, Alan L. Flint, Lorraine E. Flint
Frontiers in Ecology and the Environment
June 1, 2020

Curating a COVID-19 data repository and forecasting county-level death counts in the United States

Nick Altieri, Rebecca Barter, James Duncan, Raaz Dwivedi, Karl Kumbier, Xiao Li, Robert Netzorg, Briton Park, Chandan Singh, Yan Shuo Tan, Tiffany Tang, Yu Wang, Bin Yu
arXiv.org
May 16, 2020

Computing water flow through complex landscapes, Part 3: Fill-Spill-Merge: Flow routing in depression hierarchies

Richard Barnes, Kerry L. Callaghan, and Andrew D. Wickert
Earth Surface Dynamics
May 5, 2020

Integrative genomic analysis in African American children with asthma finds 3 novel loci associated with lung function

Pagé C. Goddard, Kevin L. Keys, Angel C.Y. Mak, Eunice Yujung Lee, Amy K. Liu, Lesly-Anne Samedy-Bates, Oona Risse-Adams, María G. Contreras, Jennifer R. Elhawary, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Celeste Eng, Blanca E. Himes, Marquitta J. White, Esteban G. Burchard
bioRxiv.org
May 3, 2020

Total COVID-19 Mortality in Italy: Excess Mortality and Age Dependence through Time-Series Analysis

Chirag Modi, Vanessa Böhm, Simone Ferraro, George Stein, Uroš Seljak
medRxiv.org
April 20, 2020

A data science framework for planning the growth of bicycle infrastructures

Luis E. Olmos, Maria Sol Tadeo, Dimitris Vlachogiannis, Fahad Alhasoun, Xavier Espinet Alegre, Catalina Ochoa, Felipe Targa, Marta C. González
Transportation Research Part C: Emerging Technologies
March 28, 2020

Trajectory-based differential expression analysis for single-cell sequencing data

Koen Van den Berge, Hector Roux de Bézieux, Kelly Street, Wouter Saelens, Robrecht Cannoodt, Yvan Saeys, Sandrine Dudoit & Lieven Clement
Nature Communications
March 5, 2020

One size does not fit all: Customizing MCMC methods for hierarchical models using NIMBLE

Lauren C. Ponisio, Perry de Valpine, Nicholas Michaud, Daniel Turek
Ecology and Evolution
February 14, 2020

Veridical data science

Bin Yu and Karl Kumbier
Proceedings of the National Academy of Sciences (PNAS)
February 13, 2020

SciPy 1.0: fundamental algorithms for scientific computing in Python

Pauli Virtanen, Ralf Gommers, Travis E. Oliphant, Matt Haberland, Tyler Reddy, David Cournapeau, Evgeni Burovski, Pearu Peterson, Warren Weckesser, Jonathan Bright, Stéfan J. van der Walt, Matthew Brett, Joshua Wilson, K. Jarrod Millman, Nikolay Mayorov, Andrew R. J. Nelson, Eric Jones, Robert Kern, Eric Larson, C J Carey, İlhan Polat, Yu Feng, Eric W. Moore, Jake VanderPlas, Denis Laxalde, Josef Perktold, Robert Cimrman, Ian Henriksen, E. A. Quintero, Charles R. Harris, Anne M. Archibald, Antônio H. Ribeiro, Fabian Pedregosa, Paul van Mulbregt & SciPy 1.0 Contributors
Nature Methods
February 3, 2020

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